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impact-cyto

R and cytometry: workflows

R and cytometry: workflows

Main workflows to start with are: the pipeline from Nowicka et al. from Mark Robinson’s lab. the primer of BioSurf for the data scientist (R pipeline). See also the valuable primer for the cytometrist. Mark Robinson’s lab does a great job developing package and workflows: CATALYST (Cytometry dATa anALYSis Tools) allows Preprocessing and Differential discovery. […]

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R and cytometry: introduction

R and cytometry: introduction

There is an increasing interest in analyzing cytometry data with R. R is not intuitive and the learning curve is not fast. But there are rewards: You can easily repeat and tweak an analysis because the analysis is a script, that is a text file with commands to run and achieve the analysis. This is […]

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